| 項目 | 説明 |
| ACF | 自己相関関数 |
| ACF.gls | gls 残差の自己相関関数 |
| ACF.lme | lme 残差の自己相関関数 |
| Alfalfa | Split-Plot Experiment on Varieties of Alfalfa |
| Assay | Bioassay on Cell Culture Plate |
| BIC | Bayesian Information Criterion |
| BIC.logLik | logLik オブジェクトの BIC |
| BodyWeight | Rat weight over time for different diets |
| Cefamandole | Pharmacokinetics of Cefamandole |
| Dialyzer | High-Flux Hemodialyzer |
| Dim | オブジェクトの次元の抽出 |
| Dim.corSpatial | corSpatial オブジェクトの次元 |
| Dim.corStruct | corStruct オブジェクトの次元 |
| Dim.pdMat | pdMat オブジェクトの次元 |
| Earthquake | 震度 |
| Fatigue | 金属疲労による亀裂 |
| Gasoline | Refinery yield of gasoline |
| Glucose | Glucose levels over time |
| Glucose2 | Glucose Levels Following Alcohol Ingestion |
| Gun | Methods for firing naval guns |
| IGF | Radioimmunoassay of IGF-I Protein |
| Initialize | オブジェクトの初期化 |
| Initialize.corStruct | corStruct オブジェクトの初期化 |
| Initialize.glsStruct | glsStruct オブジェクトの初期化 |
| Initialize.lmeStruct | Initialize an lmeStruct オブジェクトの初期化 |
| Initialize.reStruct | reStruct オブジェクトの初期化 |
| Initialize.varFunc | varFunc オブジェクトの初期化 |
| LDEsysMat | Generate system matrix for LDEs |
| Machines | Productivity Scores for Machines and Workers |
| MathAchSchool | School demographic data for MathAchieve |
| MathAchieve | Mathematics achievement scores |
| Meat | Tenderness of meat |
| Milk | Protein content of cows' milk |
| Muscle | Contraction of heart muscle sections |
| Names | Names Associated with an Object |
| Names.formula | Extract Names from a formula |
| Names.pdBlocked | Names of a pdBlocked Object |
| Names.pdMat | Names of a pdMat Object |
| Names.reStruct | Names of an reStruct Object |
| Nitrendipene | Assay of nitrendipene |
| Oats | Split-plot Experiment on Varieties of Oats |
| Orthodont | Growth curve data on an orthdontic measurement |
| Ovary | Counts of Ovarian Follicles |
| Oxboys | Heights of Boys in Oxford |
| Oxide | Variability in Semiconductor Manufacturing |
| PBG | Effect of Phenylbiguanide on Blood Pressure |
| Phenobarb | Phenobarbitol Kinetics |
| Pixel | X-ray pixel intensities over time |
| Quinidine | Quinidine Kinetics |
| Rail | Evaluation of Stress in Railway Rails |
| RatPupWeight | The weight of rat pups |
| Relaxin | Assay for Relaxin |
| Remifentanil | Pharmacokinetics of remifentanil |
| Soybean | Growth of soybean plants |
| Spruce | Growth of Spruce Trees |
| Tetracycline1 | Pharmacokinetics of tetracycline |
| Tetracycline2 | Pharmacokinetics of tetracycline |
| VarCorr | Extract variance and correlation components |
| Variogram | Calculate Semi-variogram |
| Variogram.corExp | Calculate Semi-variogram for a corExp Object |
| Variogram.corGaus | Calculate Semi-variogram for a corGaus Object |
| Variogram.corLin | Calculate Semi-variogram for a corLin Object |
| Variogram.corRatio | Calculate Semi-variogram for a corRatio Object |
| Variogram.corSpatial | Calculate Semi-variogram for a corSpatial Object |
| Variogram.corSpher | Calculate Semi-variogram for a corSpher Object |
| Variogram.default | Calculate Semi-variogram |
| Variogram.gls | Calculate Semi-variogram for Residuals from a gls Object |
| Variogram.lme | Calculate Semi-variogram for Residuals from an lme Object |
| Wafer | Modeling of Analog MOS Circuits |
| Wheat | Yields by growing conditions |
| Wheat2 | Wheat Yield Trials |
| [.pdMat | Subscript a pdMat Object |
| allCoef | Extract Coefficients from a Set of Objects |
| anova.gls | Compare Likelihoods of Fitted Objects |
| anova.lme | Compare Likelihoods of Fitted Objects |
| as.matrix.corStruct | Matrix of a corStruct Object |
| as.matrix.pdMat | Matrix of a pdMat Object |
| as.matrix.reStruct | Matrices of an reStruct Object |
| asOneFormula | Combine Formulas of a Set of Objects |
| asTable | Convert groupedData to a matrix |
| augPred | Augmented Predictions |
| balancedGrouped | Create a groupedData object from a matrix |
| bdf | Language scores |
| coef.corStruct | Coefficients of a corStruct Object |
| coef.gnls | Extract gnls Coefficients |
| coef.lmList | Extract lmList Coefficients |
| coef.lme | Extract lme Coefficients |
| coef.modelStruct | Extract modelStruct Object Coefficients |
| coef.pdMat | pdMat Object Coefficients |
| coef.reStruct | reStruct Object Coefficients |
| coef.varFunc | varFunc Object Coefficients |
| coef<- | Assign Values to Coefficients |
| collapse | Collapse According to Groups |
| collapse.groupedData | Collapse a groupedData Object |
| compareFits | Compare Fitted Objects |
| comparePred | Compare Predictions |
| corAR1 | AR(1) Correlation Structure |
| corARMA | ARMA(p,q) Correlation Structure |
| corCAR1 | Continuous AR(1) Correlation Structure |
| corClasses | Correlation Structure Classes |
| corCompSymm | Compound Symmetry Correlation Structure |
| corExp | Exponential Correlation Structure |
| corFactor | Factor of a Correlation Matrix |
| corFactor.corStruct | Factor of a corStruct Object Matrix |
| corGaus | Gaussian Correlation Structure |
| corLin | Linear Correlation Structure |
| corMatrix | Extract Correlation Matrix |
| corMatrix.corStruct | Matrix of a corStruct Object |
| corMatrix.pdMat | Extract Correlation Matrix from a pdMat Object |
| corMatrix.reStruct | Extract Correlation Matrix from Components of an reStruct Object |
| corNatural | General correlation in natural parameterization |
| corRatio | Rational Quadratic Correlation Structure |
| corSpatial | Spatial Correlation Structure |
| corSpher | Spherical Correlation Structure |
| corSymm | General Correlation Structure |
| covariate<- | Assign Covariate Values |
| covariate<-.varFunc | Assign varFunc Covariate |
| ergoStool | Ergometrics experiment with stool types |
| fdHess | Finite difference Hessian |
| fitted.glsStruct | Calculate glsStruct Fitted Values |
| fitted.gnlsStruct | Calculate gnlsStruct Fitted Values |
| fitted.lmList | Extract lmList Fitted Values |
| fitted.lme | Extract lme Fitted Values |
| fitted.lmeStruct | Calculate lmeStruct Fitted Values |
| fitted.nlmeStruct | Calculate nlmeStruct Fitted Values |
| fixed.effects | Extract Fixed Effects |
| fixef.lmList | Extract lmList Fixed Effects |
| formula.pdBlocked | Extract pdBlocked Formula |
| formula.pdMat | Extract pdMat Formula |
| formula.reStruct | Extract reStruct Object Formula |
| gapply | Apply a Function by Groups |
| getCovariate | Extract Covariate from an Object |
| getCovariate.corStruct | Extract corStruct Object Covariate |
| getCovariate.data.frame | Extract Data Frame Covariate |
| getCovariate.varFunc | Extract varFunc Covariate |
| getCovariateFormula | Extract Covariates Formula |
| getData | Extract Data from an Object |
| getData.gls | Extract gls Object Data |
| getData.lmList | Extract lmList Object Data |
| getData.lme | Extract lme Object Data |
| getGroups | Extract Grouping Factors from an Object |
| getGroups.corStruct | Extract corStruct Groups |
| getGroups.data.frame | Extract Groups from a Data Frame |
| getGroups.gls | Extract gls Object Groups |
| getGroups.lmList | Extract lmList Object Groups |
| getGroups.lme | Extract lme Object Groups |
| getGroups.varFunc | Extract varFunc Groups |
| getGroupsFormula | Extract Grouping Formula |
| getResponse | Extract Response Variable from an Object |
| getResponseFormula | Extract Formula Specifying Response Variable |
| getVarCov | Extract variance-covariance matrix |
| gls | Fit Linear Model Using Generalized Least Squares |
| glsControl | Control Values for gls Fit |
| glsObject | Fitted gls Object |
| glsStruct | Generalized Least Squares Structure |
| gnls | Fit Nonlinear Model Using Generalized Least Squares |
| gnlsControl | Control Values for gnls Fit |
| gnlsObject | Fitted gnls Object |
| gnlsStruct | Generalized Nonlinear Least Squares Structure |
| groupedData | Construct a groupedData Object |
| gsummary | Summarize by Groups |
| intervals | Confidence Intervals on Coefficients |
| intervals.gls | Confidence Intervals on gls Parameters |
| intervals.lmList | Confidence Intervals on lmList Coefficients |
| intervals.lme | Confidence Intervals on lme Parameters |
| isBalanced | Check a Design for Balance |
| isInitialized | Check if Object is Initialized |
| lmList | List of lm Objects with a Common Model |
| lmList.groupedData | lmList Fit from a groupedData Object |
| lme | Linear Mixed-Effects Models |
| lme.groupedData | LME fit from groupedData Object |
| lme.lmList | LME fit from lmList Object |
| lmeControl | Control Values for lme Fit |
| lmeObject | Fitted lme Object |
| lmeScale | Scale for lme Optimization |
| lmeStruct | Linear Mixed-Effects Structure |
| logDet | Extract the Logarithm of the Determinant |
| logDet.corStruct | Extract corStruct Log-Determinant |
| logDet.pdMat | Extract Log-Determinant from a pdMat Object |
| logDet.reStruct | Extract reStruct Log-Determinants |
| logLik.corStruct | Extract corStruct Log-Likelihood |
| logLik.glsStruct | Log-Likelihood of a glsStruct Object |
| logLik.gnls | Log-Likelihood of a gnls Object |
| logLik.gnlsStruct | Log-Likelihood of a gnlsStruct Object |
| logLik.lmList | Log-Likelihood of an lmList Object |
| logLik.lme | Log-Likelihood of an lme Object |
| logLik.lmeStruct | Log-Likelihood of an lmeStruct Object |
| logLik.reStruct | Calculate reStruct Log-Likelihood |
| logLik.varFunc | Extract varFunc logLik |
| matrix<- | Assign Matrix Values |
| matrix<-.pdMat | Assign Matrix to a pdMat Object |
| matrix<-.reStruct | Assign reStruct Matrices |
| model.matrix.reStruct | reStruct Model Matrix |
| needUpdate | Check if Update is Needed |
| needUpdate.modelStruct | Check if a modelStruct Object Needs Updating |
| nlme | Nonlinear Mixed-Effects Models |
| nlme.nlsList | NLME fit from nlsList Object |
| nlmeControl | Control Values for nlme Fit |
| nlmeObject | Fitted nlme Object |
| nlmeStruct | Nonlinear Mixed-Effects Structure |
| nlsList | List of nls Objects with a Common Model |
| nlsList.selfStart | nlsList Fit from a selfStart Function |
| pairs.compareFits | Pairs Plot of compareFits Object |
| pairs.lmList | Pairs Plot of an lmList Object |
| pairs.lme | Pairs Plot of an lme Object |
| pdBlocked | Positive-Definite Block Diagonal Matrix |
| pdClasses | Positive-Definite Matrix Classes |
| pdCompSymm | Positive-Definite Matrix with Compound Symmetry Structure |
| pdConstruct | Construct pdMat Objects |
| pdConstruct.pdBlocked | Construct pdBlocked Objects |
| pdDiag | Diagonal Positive-Definite Matrix |
| pdFactor | Square-Root Factor of a Positive-Definite Matrix |
| pdFactor.reStruct | Extract Square-Root Factor from Components of an reStruct Object |
| pdIdent | Multiple of the Identity Positive-Definite Matrix |
| pdLogChol | General Positive-Definite Matrix |
| pdMat | Positive-Definite Matrix |
| pdMatrix | Extract Matrix or Square-Root Factor from a pdMat Object |
| pdMatrix.reStruct | Extract Matrix or Square-Root Factor from Components of an reStruct Object |
| pdNatural | General Positive-Definite Matrix in Natural Parametrization |
| pdSymm | General Positive-Definite Matrix |
| phenoModel | Model function for the Phenobarb data |
| plot.ACF | Plot an ACF Object |
| plot.Variogram | Plot a Variogram Object |
| plot.augPred | Plot an augPred Object |
| plot.compareFits | Plot a compareFits Object |
| plot.gls | Plot a gls Object |
| plot.intervals.lmList | Plot lmList Confidence Intervals |
| plot.lmList | Plot an lmList Object |
| plot.lme | Plot an lme or nls object |
| plot.nffGroupedData | Plot an nffGroupedData Object |
| plot.nfnGroupedData | Plot an nfnGroupedData Object |
| plot.nmGroupedData | Plot an nmGroupedData Object |
| plot.ranef.lmList | Plot a ranef.lmList Object |
| plot.ranef.lme | Plot a ranef.lme Object |
| pooledSD | Extract Pooled Standard Deviation |
| predict.gls | Predictions from a gls Object |
| predict.gnls | Predictions from a gnls Object |
| predict.lmList | Predictions from an lmList Object |
| predict.lme | Predictions from an lme Object |
| predict.nlme | Predictions from an nlme Object |
| print.summary.pdMat | Print a summary.pdMat Object |
| print.varFunc | Print a varFunc Object |
| qqnorm.gls | Normal Plot of Residuals from a gls Object |
| qqnorm.lme | Normal Plot of Residuals or Random Effects from an lme Object |
| quinModel | Model function for the Quinidine data |
| random.effects | Extract Random Effects |
| ranef.lmList | Extract lmList Random Effects |
| ranef.lme | Extract lme Random Effects |
| reStruct | Random Effects Structure |
| recalc | Recalculate Condensed Linear Model Object |
| recalc.corStruct | Recalculate for corStruct Object |
| recalc.modelStruct | Recalculate for a modelStruct Object |
| recalc.reStruct | Recalculate for an reStruct Object |
| recalc.varFunc | Recalculate for varFunc Object |
| residuals.gls | Extract gls Residuals |
| residuals.glsStruct | Calculate glsStruct Residuals |
| residuals.gnlsStruct | Calculate gnlsStruct Residuals |
| residuals.lmList | Extract lmList Residuals |
| residuals.lme | Extract lme Residuals |
| residuals.lmeStruct | Calculate lmeStruct Residuals |
| residuals.nlmeStruct | Calculate nlmeStruct Residuals |
| simulate.lme | Simulate results from lme models |
| solve.pdMat | Calculate Inverse of a Positive-Definite Matrix |
| solve.reStruct | Apply Solve to an reStruct Object |
| splitFormula | Split a Formula |
| summary.corStruct | Summarize a corStruct Object |
| summary.gls | Summarize a gls Object |
| summary.lmList | Summarize an lmList Object |
| summary.lme | Summarize an lme Object |
| summary.modelStruct | Summarize a modelStruct Object |
| summary.nlsList | Summarize an nlsList Object |
| summary.pdMat | Summarize a pdMat Object |
| summary.varFunc | Summarize varFunc Object |
| update.modelStruct | Update a modelStruct Object |
| update.varFunc | Update varFunc Object |
| varClasses | Variance Function Classes |
| varComb | Combination of Variance Functions |
| varConstPower | Constant Plus Power Variance Function |
| varExp | Exponential Variance Function |
| varFixed | Fixed Variance Function |
| varFunc | Variance Function Structure |
| varIdent | Constant Variance Function |
| varPower | Power Variance Function |
| varWeights | Extract Variance Function Weights |
| varWeights.glsStruct | Variance Weights for glsStruct Object |
| varWeights.lmeStruct | Variance Weights for lmeStruct Object |
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