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nlmeパッケージ中のオブジェクト一覧 *COLOR(red){nlme}パッケージ(線形・非線形混合効果モデル)中のオブジェクト一覧 [#a8b1d359] Title: Linear and Nonlinear Mixed Effects Models *COLOR(red){nlme}パッケージ中のオブジェクト一覧 [#a8b1d359] |項目|説明| |ACF| 自己相関関数| |ACF.gls| gls 残差の自己相関関数| |ACF.lme| lme 残差の自己相関関数| |Alfalfa| Split-Plot Experiment on Varieties of Alfalfa| |Assay| Bioassay on Cell Culture Plate| |BIC| Bayesian Information Criterion| |BIC.logLik| logLik オブジェクトの BIC| |BodyWeight| Rat weight over time for different diets| |Cefamandole| Pharmacokinetics of Cefamandole| |Dialyzer| High-Flux Hemodialyzer| |Dim| オブジェクトの次元の抽出| |Dim.corSpatial| corSpatial オブジェクトの次元| |Dim.corStruct| corStruct オブジェクトの次元| |Dim.pdMat| pdMat オブジェクトの次元| |Earthquake| 震度| |Fatigue| 金属疲労による亀裂| |Gasoline| Refinery yield of gasoline| |Glucose| Glucose levels over time| |Glucose2| Glucose Levels Following Alcohol Ingestion| |Gun| Methods for firing naval guns| |IGF| Radioimmunoassay of IGF-I Protein| |Initialize| オブジェクトの初期化| |Initialize.corStruct| corStruct オブジェクトの初期化| |Initialize.glsStruct| glsStruct オブジェクトの初期化| |Initialize.lmeStruct| Initialize an lmeStruct オブジェクトの初期化| |Initialize.reStruct| reStruct オブジェクトの初期化| |Initialize.varFunc| varFunc オブジェクトの初期化| |LDEsysMat| Generate system matrix for LDEs| |Machines| Productivity Scores for Machines and Workers| |MathAchSchool| School demographic data for MathAchieve| |MathAchieve| Mathematics achievement scores| |Meat| Tenderness of meat| |Milk| Protein content of cows' milk| |Muscle| Contraction of heart muscle sections| |Names| Names Associated with an Object| |Names.formula| Extract Names from a formula| |Names.pdBlocked| Names of a pdBlocked Object| |Names.pdMat| Names of a pdMat Object| |Names.reStruct| Names of an reStruct Object| |Nitrendipene| Assay of nitrendipene| |Oats| Split-plot Experiment on Varieties of Oats| |Orthodont| Growth curve data on an orthdontic measurement| |Ovary| Counts of Ovarian Follicles| |Oxboys| Heights of Boys in Oxford| |Oxide| Variability in Semiconductor Manufacturing| |PBG| Effect of Phenylbiguanide on Blood Pressure| |Phenobarb| Phenobarbitol Kinetics| |Pixel| X-ray pixel intensities over time| |Quinidine| Quinidine Kinetics| |Rail| Evaluation of Stress in Railway Rails| |RatPupWeight| The weight of rat pups| |Relaxin| Assay for Relaxin| |Remifentanil| Pharmacokinetics of remifentanil| |Soybean| Growth of soybean plants| |Spruce| Growth of Spruce Trees| |Tetracycline1| Pharmacokinetics of tetracycline| |Tetracycline2| Pharmacokinetics of tetracycline| |VarCorr| Extract variance and correlation components| |Variogram| Calculate Semi-variogram| |Variogram.corExp| Calculate Semi-variogram for a corExp Object| |Variogram.corGaus| Calculate Semi-variogram for a corGaus Object| |Variogram.corLin| Calculate Semi-variogram for a corLin Object| |Variogram.corRatio| Calculate Semi-variogram for a corRatio Object| |Variogram.corSpatial| Calculate Semi-variogram for a corSpatial Object| |Variogram.corSpher| Calculate Semi-variogram for a corSpher Object| |Variogram.default| Calculate Semi-variogram| |Variogram.gls| Calculate Semi-variogram for Residuals from a gls Object| |Variogram.lme| Calculate Semi-variogram for Residuals from an lme Object| |Wafer| Modeling of Analog MOS Circuits| |Wheat| Yields by growing conditions| |Wheat2| Wheat Yield Trials| |[.pdMat| Subscript a pdMat Object| |allCoef| Extract Coefficients from a Set of Objects| |anova.gls| Compare Likelihoods of Fitted Objects| |anova.lme| Compare Likelihoods of Fitted Objects| |as.matrix.corStruct| Matrix of a corStruct Object| |as.matrix.pdMat| Matrix of a pdMat Object| |as.matrix.reStruct| Matrices of an reStruct Object| |asOneFormula| Combine Formulas of a Set of Objects| |asTable| Convert groupedData to a matrix| |augPred| Augmented Predictions| |balancedGrouped| Create a groupedData object from a matrix| |bdf| Language scores| |coef.corStruct| Coefficients of a corStruct Object| |coef.gnls| Extract gnls Coefficients| |coef.lmList| Extract lmList Coefficients| |coef.lme| Extract lme Coefficients| |coef.modelStruct| Extract modelStruct Object Coefficients| |coef.pdMat| pdMat Object Coefficients| |coef.reStruct| reStruct Object Coefficients| |coef.varFunc| varFunc Object Coefficients| |coef<-| Assign Values to Coefficients| |collapse| Collapse According to Groups| |collapse.groupedData| Collapse a groupedData Object| |compareFits| Compare Fitted Objects| |comparePred| Compare Predictions| |corAR1| AR(1) Correlation Structure| |corARMA| ARMA(p,q) Correlation Structure| |corCAR1| Continuous AR(1) Correlation Structure| |corClasses| Correlation Structure Classes| |corCompSymm| Compound Symmetry Correlation Structure| |corExp| Exponential Correlation Structure| |corFactor| Factor of a Correlation Matrix| |corFactor.corStruct| Factor of a corStruct Object Matrix| |corGaus| Gaussian Correlation Structure| |corLin| Linear Correlation Structure| |corMatrix| Extract Correlation Matrix| |corMatrix.corStruct| Matrix of a corStruct Object| |corMatrix.pdMat| Extract Correlation Matrix from a pdMat Object| |corMatrix.reStruct| Extract Correlation Matrix from Components of an reStruct Object| |corNatural| General correlation in natural parameterization| |corRatio| Rational Quadratic Correlation Structure| |corSpatial| Spatial Correlation Structure| |corSpher| Spherical Correlation Structure| |corSymm| General Correlation Structure| |covariate<-| Assign Covariate Values| |covariate<-.varFunc| Assign varFunc Covariate| |ergoStool| Ergometrics experiment with stool types| |fdHess| Finite difference Hessian| |fitted.glsStruct| Calculate glsStruct Fitted Values| |fitted.gnlsStruct| Calculate gnlsStruct Fitted Values| |fitted.lmList| Extract lmList Fitted Values| |fitted.lme| Extract lme Fitted Values| |fitted.lmeStruct| Calculate lmeStruct Fitted Values| |fitted.nlmeStruct| Calculate nlmeStruct Fitted Values| |fixed.effects| Extract Fixed Effects| |fixef.lmList| Extract lmList Fixed Effects| |formula.pdBlocked| Extract pdBlocked Formula| |formula.pdMat| Extract pdMat Formula| |formula.reStruct| Extract reStruct Object Formula| |gapply| Apply a Function by Groups| |getCovariate| Extract Covariate from an Object| |getCovariate.corStruct| Extract corStruct Object Covariate| |getCovariate.data.frame| Extract Data Frame Covariate| |getCovariate.varFunc| Extract varFunc Covariate| |getCovariateFormula| Extract Covariates Formula| |getData| Extract Data from an Object| |getData.gls| Extract gls Object Data| |getData.lmList| Extract lmList Object Data| |getData.lme| Extract lme Object Data| |getGroups| Extract Grouping Factors from an Object| |getGroups.corStruct| Extract corStruct Groups| |getGroups.data.frame| Extract Groups from a Data Frame| |getGroups.gls| Extract gls Object Groups| |getGroups.lmList| Extract lmList Object Groups| |getGroups.lme| Extract lme Object Groups| |getGroups.varFunc| Extract varFunc Groups| |getGroupsFormula| Extract Grouping Formula| |getResponse| Extract Response Variable from an Object| |getResponseFormula| Extract Formula Specifying Response Variable| |getVarCov| Extract variance-covariance matrix| |gls| Fit Linear Model Using Generalized Least Squares| |glsControl| Control Values for gls Fit| |glsObject| Fitted gls Object| |glsStruct| Generalized Least Squares Structure| |gnls| Fit Nonlinear Model Using Generalized Least Squares| |gnlsControl| Control Values for gnls Fit| |gnlsObject| Fitted gnls Object| |gnlsStruct| Generalized Nonlinear Least Squares Structure| |groupedData| Construct a groupedData Object| |gsummary| Summarize by Groups| |intervals| Confidence Intervals on Coefficients| |intervals.gls| Confidence Intervals on gls Parameters| |intervals.lmList| Confidence Intervals on lmList Coefficients| |intervals.lme| Confidence Intervals on lme Parameters| |isBalanced| Check a Design for Balance| |isInitialized | Check if Object is Initialized| |lmList| List of lm Objects with a Common Model| |lmList.groupedData| lmList Fit from a groupedData Object| |lme| Linear Mixed-Effects Models| |lme.groupedData| LME fit from groupedData Object| |lme.lmList| LME fit from lmList Object| |lmeControl| Control Values for lme Fit| |lmeObject| Fitted lme Object| |lmeScale| Scale for lme Optimization| |lmeStruct| Linear Mixed-Effects Structure| |logDet| Extract the Logarithm of the Determinant| |logDet.corStruct| Extract corStruct Log-Determinant| |logDet.pdMat| Extract Log-Determinant from a pdMat Object| |logDet.reStruct| Extract reStruct Log-Determinants| |logLik.corStruct| Extract corStruct Log-Likelihood| |logLik.glsStruct| Log-Likelihood of a glsStruct Object| |logLik.gnls| Log-Likelihood of a gnls Object| |logLik.gnlsStruct| Log-Likelihood of a gnlsStruct Object| |logLik.lmList| Log-Likelihood of an lmList Object| |logLik.lme| Log-Likelihood of an lme Object| |logLik.lmeStruct| Log-Likelihood of an lmeStruct Object| |logLik.reStruct| Calculate reStruct Log-Likelihood| |logLik.varFunc| Extract varFunc logLik| |matrix<-| Assign Matrix Values| |matrix<-.pdMat| Assign Matrix to a pdMat Object| |matrix<-.reStruct| Assign reStruct Matrices| |model.matrix.reStruct| reStruct Model Matrix| |needUpdate| Check if Update is Needed| |needUpdate.modelStruct| Check if a modelStruct Object Needs Updating| |nlme| Nonlinear Mixed-Effects Models| |nlme.nlsList| NLME fit from nlsList Object| |nlmeControl| Control Values for nlme Fit| |nlmeObject| Fitted nlme Object| |nlmeStruct| Nonlinear Mixed-Effects Structure| |nlsList| List of nls Objects with a Common Model| |nlsList.selfStart| nlsList Fit from a selfStart Function| |pairs.compareFits| Pairs Plot of compareFits Object| |pairs.lmList| Pairs Plot of an lmList Object| |pairs.lme| Pairs Plot of an lme Object| |pdBlocked| Positive-Definite Block Diagonal Matrix| |pdClasses| Positive-Definite Matrix Classes| |pdCompSymm| Positive-Definite Matrix with Compound Symmetry Structure| |pdConstruct| Construct pdMat Objects| |pdConstruct.pdBlocked| Construct pdBlocked Objects| |pdDiag| Diagonal Positive-Definite Matrix| |pdFactor| Square-Root Factor of a Positive-Definite Matrix| |pdFactor.reStruct| Extract Square-Root Factor from Components of an reStruct Object| |pdIdent| Multiple of the Identity Positive-Definite Matrix| |pdLogChol| General Positive-Definite Matrix| |pdMat| Positive-Definite Matrix| |pdMatrix| Extract Matrix or Square-Root Factor from a pdMat Object| |pdMatrix.reStruct| Extract Matrix or Square-Root Factor from Components of an reStruct Object| |pdNatural| General Positive-Definite Matrix in Natural Parametrization| |pdSymm| General Positive-Definite Matrix| |phenoModel| Model function for the Phenobarb data| |plot.ACF| Plot an ACF Object| |plot.Variogram| Plot a Variogram Object| |plot.augPred| Plot an augPred Object| |plot.compareFits| Plot a compareFits Object| |plot.gls| Plot a gls Object| |plot.intervals.lmList| Plot lmList Confidence Intervals| |plot.lmList| Plot an lmList Object| |plot.lme| Plot an lme or nls object| |plot.nffGroupedData| Plot an nffGroupedData Object| |plot.nfnGroupedData| Plot an nfnGroupedData Object| |plot.nmGroupedData| Plot an nmGroupedData Object| |plot.ranef.lmList| Plot a ranef.lmList Object| |plot.ranef.lme| Plot a ranef.lme Object| |pooledSD| Extract Pooled Standard Deviation| |predict.gls| Predictions from a gls Object| |predict.gnls| Predictions from a gnls Object| |predict.lmList| Predictions from an lmList Object| |predict.lme| Predictions from an lme Object| |predict.nlme| Predictions from an nlme Object| |print.summary.pdMat| Print a summary.pdMat Object| |print.varFunc| Print a varFunc Object| |qqnorm.gls| Normal Plot of Residuals from a gls Object| |qqnorm.lme| Normal Plot of Residuals or Random Effects from an lme Object| |quinModel| Model function for the Quinidine data| |random.effects| Extract Random Effects| |ranef.lmList| Extract lmList Random Effects| |ranef.lme| Extract lme Random Effects| |reStruct| Random Effects Structure| |recalc| Recalculate Condensed Linear Model Object| |recalc.corStruct| Recalculate for corStruct Object| |recalc.modelStruct| Recalculate for a modelStruct Object| |recalc.reStruct| Recalculate for an reStruct Object| |recalc.varFunc| Recalculate for varFunc Object| |residuals.gls| Extract gls Residuals| |residuals.glsStruct| Calculate glsStruct Residuals| |residuals.gnlsStruct| Calculate gnlsStruct Residuals| |residuals.lmList| Extract lmList Residuals| |residuals.lme| Extract lme Residuals| |residuals.lmeStruct| Calculate lmeStruct Residuals| |residuals.nlmeStruct| Calculate nlmeStruct Residuals| |simulate.lme| Simulate results from lme models| |solve.pdMat| Calculate Inverse of a Positive-Definite Matrix| |solve.reStruct| Apply Solve to an reStruct Object| |splitFormula| Split a Formula| |summary.corStruct| Summarize a corStruct Object| |summary.gls| Summarize a gls Object| |summary.lmList| Summarize an lmList Object| |summary.lme| Summarize an lme Object| |summary.modelStruct| Summarize a modelStruct Object| |summary.nlsList| Summarize an nlsList Object| |summary.pdMat| Summarize a pdMat Object| |summary.varFunc| Summarize varFunc Object| |update.modelStruct| Update a modelStruct Object| |update.varFunc| Update varFunc Object| |varClasses| Variance Function Classes| |varComb| Combination of Variance Functions| |varConstPower| Constant Plus Power Variance Function| |varExp| Exponential Variance Function| |varFixed| Fixed Variance Function| |varFunc| Variance Function Structure| |varIdent| Constant Variance Function| |varPower| Power Variance Function| |varWeights| Extract Variance Function Weights| |varWeights.glsStruct| Variance Weights for glsStruct Object| |varWeights.lmeStruct| Variance Weights for lmeStruct Object|
