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開始行:
*COLOR(red){nlme}パッケージ(線形・非線形混合効果モデル)中のオブジェクト一覧 [#a8b1d359]
|項目|説明|
|ACF| 自己相関関数|
|ACF.gls| gls 残差の自己相関関数|
|ACF.lme| lme 残差の自己相関関数|
|Alfalfa| Split-Plot Experiment on Varieties of Alfalfa|
|Assay| Bioassay on Cell Culture Plate|
|BIC| Bayesian Information Criterion|
|BIC.logLik| logLik オブジェクトの BIC|
|BodyWeight| Rat weight over time for different diets|
|Cefamandole| Pharmacokinetics of Cefamandole|
|Dialyzer| High-Flux Hemodialyzer|
|Dim| オブジェクトの次元の抽出|
|Dim.corSpatial| corSpatial オブジェクトの次元|
|Dim.corStruct| corStruct オブジェクトの次元|
|Dim.pdMat| pdMat オブジェクトの次元|
|Earthquake| 震度|
|Fatigue| 金属疲労による亀裂|
|Gasoline| Refinery yield of gasoline|
|Glucose| Glucose levels over time|
|Glucose2| Glucose Levels Following Alcohol Ingestion|
|Gun| Methods for firing naval guns|
|IGF| Radioimmunoassay of IGF-I Protein|
|Initialize| オブジェクトの初期化|
|Initialize.corStruct| corStruct オブジェクトの初期化|
|Initialize.glsStruct| glsStruct オブジェクトの初期化|
|Initialize.lmeStruct| Initialize an lmeStruct オブジェクトの初期化|
|Initialize.reStruct| reStruct オブジェクトの初期化|
|Initialize.varFunc| varFunc オブジェクトの初期化|
|LDEsysMat| Generate system matrix for LDEs|
|Machines| Productivity Scores for Machines and Workers|
|MathAchSchool| School demographic data for MathAchieve|
|MathAchieve| Mathematics achievement scores|
|Meat| Tenderness of meat|
|Milk| Protein content of cows' milk|
|Muscle| Contraction of heart muscle sections|
|Names| Names Associated with an Object|
|Names.formula| Extract Names from a formula|
|Names.pdBlocked| Names of a pdBlocked Object|
|Names.pdMat| Names of a pdMat Object|
|Names.reStruct| Names of an reStruct Object|
|Nitrendipene| Assay of nitrendipene|
|Oats| Split-plot Experiment on Varieties of Oats|
|Orthodont| Growth curve data on an orthdontic measurement|
|Ovary| Counts of Ovarian Follicles|
|Oxboys| Heights of Boys in Oxford|
|Oxide| Variability in Semiconductor Manufacturing|
|PBG| Effect of Phenylbiguanide on Blood Pressure|
|Phenobarb| Phenobarbitol Kinetics|
|Pixel| X-ray pixel intensities over time|
|Quinidine| Quinidine Kinetics|
|Rail| Evaluation of Stress in Railway Rails|
|RatPupWeight| The weight of rat pups|
|Relaxin| Assay for Relaxin|
|Remifentanil| Pharmacokinetics of remifentanil|
|Soybean| Growth of soybean plants|
|Spruce| Growth of Spruce Trees|
|Tetracycline1| Pharmacokinetics of tetracycline|
|Tetracycline2| Pharmacokinetics of tetracycline|
|VarCorr| Extract variance and correlation components|
|Variogram| Calculate Semi-variogram|
|Variogram.corExp| Calculate Semi-variogram for a corExp Object|
|Variogram.corGaus| Calculate Semi-variogram for a corGaus Object|
|Variogram.corLin| Calculate Semi-variogram for a corLin Object|
|Variogram.corRatio| Calculate Semi-variogram for a corRatio Object|
|Variogram.corSpatial| Calculate Semi-variogram for a corSpatial Object|
|Variogram.corSpher| Calculate Semi-variogram for a corSpher Object|
|Variogram.default| Calculate Semi-variogram|
|Variogram.gls| Calculate Semi-variogram for Residuals from a gls Object|
|Variogram.lme| Calculate Semi-variogram for Residuals from an lme Object|
|Wafer| Modeling of Analog MOS Circuits|
|Wheat| Yields by growing conditions|
|Wheat2| Wheat Yield Trials|
|[.pdMat| Subscript a pdMat Object|
|allCoef| Extract Coefficients from a Set of Objects|
|anova.gls| Compare Likelihoods of Fitted Objects|
|anova.lme| Compare Likelihoods of Fitted Objects|
|as.matrix.corStruct| Matrix of a corStruct Object|
|as.matrix.pdMat| Matrix of a pdMat Object|
|as.matrix.reStruct| Matrices of an reStruct Object|
|asOneFormula| Combine Formulas of a Set of Objects|
|asTable| Convert groupedData to a matrix|
|augPred| Augmented Predictions|
|balancedGrouped| Create a groupedData object from a matrix|
|bdf| Language scores|
|coef.corStruct| Coefficients of a corStruct Object|
|coef.gnls| Extract gnls Coefficients|
|coef.lmList| Extract lmList Coefficients|
|coef.lme| Extract lme Coefficients|
|coef.modelStruct| Extract modelStruct Object Coefficients|
|coef.pdMat| pdMat Object Coefficients|
|coef.reStruct| reStruct Object Coefficients|
|coef.varFunc| varFunc Object Coefficients|
|coef<-| Assign Values to Coefficients|
|collapse| Collapse According to Groups|
|collapse.groupedData| Collapse a groupedData Object|
|compareFits| Compare Fitted Objects|
|comparePred| Compare Predictions|
|corAR1| AR(1) Correlation Structure|
|corARMA| ARMA(p,q) Correlation Structure|
|corCAR1| Continuous AR(1) Correlation Structure|
|corClasses| Correlation Structure Classes|
|corCompSymm| Compound Symmetry Correlation Structure|
|corExp| Exponential Correlation Structure|
|corFactor| Factor of a Correlation Matrix|
|corFactor.corStruct| Factor of a corStruct Object Matrix|
|corGaus| Gaussian Correlation Structure|
|corLin| Linear Correlation Structure|
|corMatrix| Extract Correlation Matrix|
|corMatrix.corStruct| Matrix of a corStruct Object|
|corMatrix.pdMat| Extract Correlation Matrix from a pdMat Object|
|corMatrix.reStruct| Extract Correlation Matrix from Components of an reStruct Object|
|corNatural| General correlation in natural parameterization|
|corRatio| Rational Quadratic Correlation Structure|
|corSpatial| Spatial Correlation Structure|
|corSpher| Spherical Correlation Structure|
|corSymm| General Correlation Structure|
|covariate<-| Assign Covariate Values|
|covariate<-.varFunc| Assign varFunc Covariate|
|ergoStool| Ergometrics experiment with stool types|
|fdHess| Finite difference Hessian|
|fitted.glsStruct| Calculate glsStruct Fitted Values|
|fitted.gnlsStruct| Calculate gnlsStruct Fitted Values|
|fitted.lmList| Extract lmList Fitted Values|
|fitted.lme| Extract lme Fitted Values|
|fitted.lmeStruct| Calculate lmeStruct Fitted Values|
|fitted.nlmeStruct| Calculate nlmeStruct Fitted Values|
|fixed.effects| Extract Fixed Effects|
|fixef.lmList| Extract lmList Fixed Effects|
|formula.pdBlocked| Extract pdBlocked Formula|
|formula.pdMat| Extract pdMat Formula|
|formula.reStruct| Extract reStruct Object Formula|
|gapply| Apply a Function by Groups|
|getCovariate| Extract Covariate from an Object|
|getCovariate.corStruct| Extract corStruct Object Covariate|
|getCovariate.data.frame| Extract Data Frame Covariate|
|getCovariate.varFunc| Extract varFunc Covariate|
|getCovariateFormula| Extract Covariates Formula|
|getData| Extract Data from an Object|
|getData.gls| Extract gls Object Data|
|getData.lmList| Extract lmList Object Data|
|getData.lme| Extract lme Object Data|
|getGroups| Extract Grouping Factors from an Object|
|getGroups.corStruct| Extract corStruct Groups|
|getGroups.data.frame| Extract Groups from a Data Frame|
|getGroups.gls| Extract gls Object Groups|
|getGroups.lmList| Extract lmList Object Groups|
|getGroups.lme| Extract lme Object Groups|
|getGroups.varFunc| Extract varFunc Groups|
|getGroupsFormula| Extract Grouping Formula|
|getResponse| Extract Response Variable from an Object|
|getResponseFormula| Extract Formula Specifying Response Variable|
|getVarCov| Extract variance-covariance matrix|
|gls| Fit Linear Model Using Generalized Least Squares|
|glsControl| Control Values for gls Fit|
|glsObject| Fitted gls Object|
|glsStruct| Generalized Least Squares Structure|
|gnls| Fit Nonlinear Model Using Generalized Least Squares|
|gnlsControl| Control Values for gnls Fit|
|gnlsObject| Fitted gnls Object|
|gnlsStruct| Generalized Nonlinear Least Squares Structure|
|groupedData| Construct a groupedData Object|
|gsummary| Summarize by Groups|
|intervals| Confidence Intervals on Coefficients|
|intervals.gls| Confidence Intervals on gls Parameters|
|intervals.lmList| Confidence Intervals on lmList Coefficients|
|intervals.lme| Confidence Intervals on lme Parameters|
|isBalanced| Check a Design for Balance|
|isInitialized | Check if Object is Initialized|
|lmList| List of lm Objects with a Common Model|
|lmList.groupedData| lmList Fit from a groupedData Object|
|lme| Linear Mixed-Effects Models|
|lme.groupedData| LME fit from groupedData Object|
|lme.lmList| LME fit from lmList Object|
|lmeControl| Control Values for lme Fit|
|lmeObject| Fitted lme Object|
|lmeScale| Scale for lme Optimization|
|lmeStruct| Linear Mixed-Effects Structure|
|logDet| Extract the Logarithm of the Determinant|
|logDet.corStruct| Extract corStruct Log-Determinant|
|logDet.pdMat| Extract Log-Determinant from a pdMat Object|
|logDet.reStruct| Extract reStruct Log-Determinants|
|logLik.corStruct| Extract corStruct Log-Likelihood|
|logLik.glsStruct| Log-Likelihood of a glsStruct Object|
|logLik.gnls| Log-Likelihood of a gnls Object|
|logLik.gnlsStruct| Log-Likelihood of a gnlsStruct Object|
|logLik.lmList| Log-Likelihood of an lmList Object|
|logLik.lme| Log-Likelihood of an lme Object|
|logLik.lmeStruct| Log-Likelihood of an lmeStruct Object|
|logLik.reStruct| Calculate reStruct Log-Likelihood|
|logLik.varFunc| Extract varFunc logLik|
|matrix<-| Assign Matrix Values|
|matrix<-.pdMat| Assign Matrix to a pdMat Object|
|matrix<-.reStruct| Assign reStruct Matrices|
|model.matrix.reStruct| reStruct Model Matrix|
|needUpdate| Check if Update is Needed|
|needUpdate.modelStruct| Check if a modelStruct Object Needs Updating|
|nlme| Nonlinear Mixed-Effects Models|
|nlme.nlsList| NLME fit from nlsList Object|
|nlmeControl| Control Values for nlme Fit|
|nlmeObject| Fitted nlme Object|
|nlmeStruct| Nonlinear Mixed-Effects Structure|
|nlsList| List of nls Objects with a Common Model|
|nlsList.selfStart| nlsList Fit from a selfStart Function|
|pairs.compareFits| Pairs Plot of compareFits Object|
|pairs.lmList| Pairs Plot of an lmList Object|
|pairs.lme| Pairs Plot of an lme Object|
|pdBlocked| Positive-Definite Block Diagonal Matrix|
|pdClasses| Positive-Definite Matrix Classes|
|pdCompSymm| Positive-Definite Matrix with Compound Symmetry Structure|
|pdConstruct| Construct pdMat Objects|
|pdConstruct.pdBlocked| Construct pdBlocked Objects|
|pdDiag| Diagonal Positive-Definite Matrix|
|pdFactor| Square-Root Factor of a Positive-Definite Matrix|
|pdFactor.reStruct| Extract Square-Root Factor from Components of an reStruct Object|
|pdIdent| Multiple of the Identity Positive-Definite Matrix|
|pdLogChol| General Positive-Definite Matrix|
|pdMat| Positive-Definite Matrix|
|pdMatrix| Extract Matrix or Square-Root Factor from a pdMat Object|
|pdMatrix.reStruct| Extract Matrix or Square-Root Factor from Components of an reStruct Object|
|pdNatural| General Positive-Definite Matrix in Natural Parametrization|
|pdSymm| General Positive-Definite Matrix|
|phenoModel| Model function for the Phenobarb data|
|plot.ACF| Plot an ACF Object|
|plot.Variogram| Plot a Variogram Object|
|plot.augPred| Plot an augPred Object|
|plot.compareFits| Plot a compareFits Object|
|plot.gls| Plot a gls Object|
|plot.intervals.lmList| Plot lmList Confidence Intervals|
|plot.lmList| Plot an lmList Object|
|plot.lme| Plot an lme or nls object|
|plot.nffGroupedData| Plot an nffGroupedData Object|
|plot.nfnGroupedData| Plot an nfnGroupedData Object|
|plot.nmGroupedData| Plot an nmGroupedData Object|
|plot.ranef.lmList| Plot a ranef.lmList Object|
|plot.ranef.lme| Plot a ranef.lme Object|
|pooledSD| Extract Pooled Standard Deviation|
|predict.gls| Predictions from a gls Object|
|predict.gnls| Predictions from a gnls Object|
|predict.lmList| Predictions from an lmList Object|
|predict.lme| Predictions from an lme Object|
|predict.nlme| Predictions from an nlme Object|
|print.summary.pdMat| Print a summary.pdMat Object|
|print.varFunc| Print a varFunc Object|
|qqnorm.gls| Normal Plot of Residuals from a gls Object|
|qqnorm.lme| Normal Plot of Residuals or Random Effects from an lme Object|
|quinModel| Model function for the Quinidine data|
|random.effects| Extract Random Effects|
|ranef.lmList| Extract lmList Random Effects|
|ranef.lme| Extract lme Random Effects|
|reStruct| Random Effects Structure|
|recalc| Recalculate Condensed Linear Model Object|
|recalc.corStruct| Recalculate for corStruct Object|
|recalc.modelStruct| Recalculate for a modelStruct Object|
|recalc.reStruct| Recalculate for an reStruct Object|
|recalc.varFunc| Recalculate for varFunc Object|
|residuals.gls| Extract gls Residuals|
|residuals.glsStruct| Calculate glsStruct Residuals|
|residuals.gnlsStruct| Calculate gnlsStruct Residuals|
|residuals.lmList| Extract lmList Residuals|
|residuals.lme| Extract lme Residuals|
|residuals.lmeStruct| Calculate lmeStruct Residuals|
|residuals.nlmeStruct| Calculate nlmeStruct Residuals|
|simulate.lme| Simulate results from lme models|
|solve.pdMat| Calculate Inverse of a Positive-Definite Matrix|
|solve.reStruct| Apply Solve to an reStruct Object|
|splitFormula| Split a Formula|
|summary.corStruct| Summarize a corStruct Object|
|summary.gls| Summarize a gls Object|
|summary.lmList| Summarize an lmList Object|
|summary.lme| Summarize an lme Object|
|summary.modelStruct| Summarize a modelStruct Object|
|summary.nlsList| Summarize an nlsList Object|
|summary.pdMat| Summarize a pdMat Object|
|summary.varFunc| Summarize varFunc Object|
|update.modelStruct| Update a modelStruct Object|
|update.varFunc| Update varFunc Object|
|varClasses| Variance Function Classes|
|varComb| Combination of Variance Functions|
|varConstPower| Constant Plus Power Variance Function|
|varExp| Exponential Variance Function|
|varFixed| Fixed Variance Function|
|varFunc| Variance Function Structure|
|varIdent| Constant Variance Function|
|varPower| Power Variance Function|
|varWeights| Extract Variance Function Weights|
|varWeights.glsStruct| Variance Weights for glsStruct Object|
|varWeights.lmeStruct| Variance Weights for lmeStruct Object|
終了行:
*COLOR(red){nlme}パッケージ(線形・非線形混合効果モデル)中のオブジェクト一覧 [#a8b1d359]
|項目|説明|
|ACF| 自己相関関数|
|ACF.gls| gls 残差の自己相関関数|
|ACF.lme| lme 残差の自己相関関数|
|Alfalfa| Split-Plot Experiment on Varieties of Alfalfa|
|Assay| Bioassay on Cell Culture Plate|
|BIC| Bayesian Information Criterion|
|BIC.logLik| logLik オブジェクトの BIC|
|BodyWeight| Rat weight over time for different diets|
|Cefamandole| Pharmacokinetics of Cefamandole|
|Dialyzer| High-Flux Hemodialyzer|
|Dim| オブジェクトの次元の抽出|
|Dim.corSpatial| corSpatial オブジェクトの次元|
|Dim.corStruct| corStruct オブジェクトの次元|
|Dim.pdMat| pdMat オブジェクトの次元|
|Earthquake| 震度|
|Fatigue| 金属疲労による亀裂|
|Gasoline| Refinery yield of gasoline|
|Glucose| Glucose levels over time|
|Glucose2| Glucose Levels Following Alcohol Ingestion|
|Gun| Methods for firing naval guns|
|IGF| Radioimmunoassay of IGF-I Protein|
|Initialize| オブジェクトの初期化|
|Initialize.corStruct| corStruct オブジェクトの初期化|
|Initialize.glsStruct| glsStruct オブジェクトの初期化|
|Initialize.lmeStruct| Initialize an lmeStruct オブジェクトの初期化|
|Initialize.reStruct| reStruct オブジェクトの初期化|
|Initialize.varFunc| varFunc オブジェクトの初期化|
|LDEsysMat| Generate system matrix for LDEs|
|Machines| Productivity Scores for Machines and Workers|
|MathAchSchool| School demographic data for MathAchieve|
|MathAchieve| Mathematics achievement scores|
|Meat| Tenderness of meat|
|Milk| Protein content of cows' milk|
|Muscle| Contraction of heart muscle sections|
|Names| Names Associated with an Object|
|Names.formula| Extract Names from a formula|
|Names.pdBlocked| Names of a pdBlocked Object|
|Names.pdMat| Names of a pdMat Object|
|Names.reStruct| Names of an reStruct Object|
|Nitrendipene| Assay of nitrendipene|
|Oats| Split-plot Experiment on Varieties of Oats|
|Orthodont| Growth curve data on an orthdontic measurement|
|Ovary| Counts of Ovarian Follicles|
|Oxboys| Heights of Boys in Oxford|
|Oxide| Variability in Semiconductor Manufacturing|
|PBG| Effect of Phenylbiguanide on Blood Pressure|
|Phenobarb| Phenobarbitol Kinetics|
|Pixel| X-ray pixel intensities over time|
|Quinidine| Quinidine Kinetics|
|Rail| Evaluation of Stress in Railway Rails|
|RatPupWeight| The weight of rat pups|
|Relaxin| Assay for Relaxin|
|Remifentanil| Pharmacokinetics of remifentanil|
|Soybean| Growth of soybean plants|
|Spruce| Growth of Spruce Trees|
|Tetracycline1| Pharmacokinetics of tetracycline|
|Tetracycline2| Pharmacokinetics of tetracycline|
|VarCorr| Extract variance and correlation components|
|Variogram| Calculate Semi-variogram|
|Variogram.corExp| Calculate Semi-variogram for a corExp Object|
|Variogram.corGaus| Calculate Semi-variogram for a corGaus Object|
|Variogram.corLin| Calculate Semi-variogram for a corLin Object|
|Variogram.corRatio| Calculate Semi-variogram for a corRatio Object|
|Variogram.corSpatial| Calculate Semi-variogram for a corSpatial Object|
|Variogram.corSpher| Calculate Semi-variogram for a corSpher Object|
|Variogram.default| Calculate Semi-variogram|
|Variogram.gls| Calculate Semi-variogram for Residuals from a gls Object|
|Variogram.lme| Calculate Semi-variogram for Residuals from an lme Object|
|Wafer| Modeling of Analog MOS Circuits|
|Wheat| Yields by growing conditions|
|Wheat2| Wheat Yield Trials|
|[.pdMat| Subscript a pdMat Object|
|allCoef| Extract Coefficients from a Set of Objects|
|anova.gls| Compare Likelihoods of Fitted Objects|
|anova.lme| Compare Likelihoods of Fitted Objects|
|as.matrix.corStruct| Matrix of a corStruct Object|
|as.matrix.pdMat| Matrix of a pdMat Object|
|as.matrix.reStruct| Matrices of an reStruct Object|
|asOneFormula| Combine Formulas of a Set of Objects|
|asTable| Convert groupedData to a matrix|
|augPred| Augmented Predictions|
|balancedGrouped| Create a groupedData object from a matrix|
|bdf| Language scores|
|coef.corStruct| Coefficients of a corStruct Object|
|coef.gnls| Extract gnls Coefficients|
|coef.lmList| Extract lmList Coefficients|
|coef.lme| Extract lme Coefficients|
|coef.modelStruct| Extract modelStruct Object Coefficients|
|coef.pdMat| pdMat Object Coefficients|
|coef.reStruct| reStruct Object Coefficients|
|coef.varFunc| varFunc Object Coefficients|
|coef<-| Assign Values to Coefficients|
|collapse| Collapse According to Groups|
|collapse.groupedData| Collapse a groupedData Object|
|compareFits| Compare Fitted Objects|
|comparePred| Compare Predictions|
|corAR1| AR(1) Correlation Structure|
|corARMA| ARMA(p,q) Correlation Structure|
|corCAR1| Continuous AR(1) Correlation Structure|
|corClasses| Correlation Structure Classes|
|corCompSymm| Compound Symmetry Correlation Structure|
|corExp| Exponential Correlation Structure|
|corFactor| Factor of a Correlation Matrix|
|corFactor.corStruct| Factor of a corStruct Object Matrix|
|corGaus| Gaussian Correlation Structure|
|corLin| Linear Correlation Structure|
|corMatrix| Extract Correlation Matrix|
|corMatrix.corStruct| Matrix of a corStruct Object|
|corMatrix.pdMat| Extract Correlation Matrix from a pdMat Object|
|corMatrix.reStruct| Extract Correlation Matrix from Components of an reStruct Object|
|corNatural| General correlation in natural parameterization|
|corRatio| Rational Quadratic Correlation Structure|
|corSpatial| Spatial Correlation Structure|
|corSpher| Spherical Correlation Structure|
|corSymm| General Correlation Structure|
|covariate<-| Assign Covariate Values|
|covariate<-.varFunc| Assign varFunc Covariate|
|ergoStool| Ergometrics experiment with stool types|
|fdHess| Finite difference Hessian|
|fitted.glsStruct| Calculate glsStruct Fitted Values|
|fitted.gnlsStruct| Calculate gnlsStruct Fitted Values|
|fitted.lmList| Extract lmList Fitted Values|
|fitted.lme| Extract lme Fitted Values|
|fitted.lmeStruct| Calculate lmeStruct Fitted Values|
|fitted.nlmeStruct| Calculate nlmeStruct Fitted Values|
|fixed.effects| Extract Fixed Effects|
|fixef.lmList| Extract lmList Fixed Effects|
|formula.pdBlocked| Extract pdBlocked Formula|
|formula.pdMat| Extract pdMat Formula|
|formula.reStruct| Extract reStruct Object Formula|
|gapply| Apply a Function by Groups|
|getCovariate| Extract Covariate from an Object|
|getCovariate.corStruct| Extract corStruct Object Covariate|
|getCovariate.data.frame| Extract Data Frame Covariate|
|getCovariate.varFunc| Extract varFunc Covariate|
|getCovariateFormula| Extract Covariates Formula|
|getData| Extract Data from an Object|
|getData.gls| Extract gls Object Data|
|getData.lmList| Extract lmList Object Data|
|getData.lme| Extract lme Object Data|
|getGroups| Extract Grouping Factors from an Object|
|getGroups.corStruct| Extract corStruct Groups|
|getGroups.data.frame| Extract Groups from a Data Frame|
|getGroups.gls| Extract gls Object Groups|
|getGroups.lmList| Extract lmList Object Groups|
|getGroups.lme| Extract lme Object Groups|
|getGroups.varFunc| Extract varFunc Groups|
|getGroupsFormula| Extract Grouping Formula|
|getResponse| Extract Response Variable from an Object|
|getResponseFormula| Extract Formula Specifying Response Variable|
|getVarCov| Extract variance-covariance matrix|
|gls| Fit Linear Model Using Generalized Least Squares|
|glsControl| Control Values for gls Fit|
|glsObject| Fitted gls Object|
|glsStruct| Generalized Least Squares Structure|
|gnls| Fit Nonlinear Model Using Generalized Least Squares|
|gnlsControl| Control Values for gnls Fit|
|gnlsObject| Fitted gnls Object|
|gnlsStruct| Generalized Nonlinear Least Squares Structure|
|groupedData| Construct a groupedData Object|
|gsummary| Summarize by Groups|
|intervals| Confidence Intervals on Coefficients|
|intervals.gls| Confidence Intervals on gls Parameters|
|intervals.lmList| Confidence Intervals on lmList Coefficients|
|intervals.lme| Confidence Intervals on lme Parameters|
|isBalanced| Check a Design for Balance|
|isInitialized | Check if Object is Initialized|
|lmList| List of lm Objects with a Common Model|
|lmList.groupedData| lmList Fit from a groupedData Object|
|lme| Linear Mixed-Effects Models|
|lme.groupedData| LME fit from groupedData Object|
|lme.lmList| LME fit from lmList Object|
|lmeControl| Control Values for lme Fit|
|lmeObject| Fitted lme Object|
|lmeScale| Scale for lme Optimization|
|lmeStruct| Linear Mixed-Effects Structure|
|logDet| Extract the Logarithm of the Determinant|
|logDet.corStruct| Extract corStruct Log-Determinant|
|logDet.pdMat| Extract Log-Determinant from a pdMat Object|
|logDet.reStruct| Extract reStruct Log-Determinants|
|logLik.corStruct| Extract corStruct Log-Likelihood|
|logLik.glsStruct| Log-Likelihood of a glsStruct Object|
|logLik.gnls| Log-Likelihood of a gnls Object|
|logLik.gnlsStruct| Log-Likelihood of a gnlsStruct Object|
|logLik.lmList| Log-Likelihood of an lmList Object|
|logLik.lme| Log-Likelihood of an lme Object|
|logLik.lmeStruct| Log-Likelihood of an lmeStruct Object|
|logLik.reStruct| Calculate reStruct Log-Likelihood|
|logLik.varFunc| Extract varFunc logLik|
|matrix<-| Assign Matrix Values|
|matrix<-.pdMat| Assign Matrix to a pdMat Object|
|matrix<-.reStruct| Assign reStruct Matrices|
|model.matrix.reStruct| reStruct Model Matrix|
|needUpdate| Check if Update is Needed|
|needUpdate.modelStruct| Check if a modelStruct Object Needs Updating|
|nlme| Nonlinear Mixed-Effects Models|
|nlme.nlsList| NLME fit from nlsList Object|
|nlmeControl| Control Values for nlme Fit|
|nlmeObject| Fitted nlme Object|
|nlmeStruct| Nonlinear Mixed-Effects Structure|
|nlsList| List of nls Objects with a Common Model|
|nlsList.selfStart| nlsList Fit from a selfStart Function|
|pairs.compareFits| Pairs Plot of compareFits Object|
|pairs.lmList| Pairs Plot of an lmList Object|
|pairs.lme| Pairs Plot of an lme Object|
|pdBlocked| Positive-Definite Block Diagonal Matrix|
|pdClasses| Positive-Definite Matrix Classes|
|pdCompSymm| Positive-Definite Matrix with Compound Symmetry Structure|
|pdConstruct| Construct pdMat Objects|
|pdConstruct.pdBlocked| Construct pdBlocked Objects|
|pdDiag| Diagonal Positive-Definite Matrix|
|pdFactor| Square-Root Factor of a Positive-Definite Matrix|
|pdFactor.reStruct| Extract Square-Root Factor from Components of an reStruct Object|
|pdIdent| Multiple of the Identity Positive-Definite Matrix|
|pdLogChol| General Positive-Definite Matrix|
|pdMat| Positive-Definite Matrix|
|pdMatrix| Extract Matrix or Square-Root Factor from a pdMat Object|
|pdMatrix.reStruct| Extract Matrix or Square-Root Factor from Components of an reStruct Object|
|pdNatural| General Positive-Definite Matrix in Natural Parametrization|
|pdSymm| General Positive-Definite Matrix|
|phenoModel| Model function for the Phenobarb data|
|plot.ACF| Plot an ACF Object|
|plot.Variogram| Plot a Variogram Object|
|plot.augPred| Plot an augPred Object|
|plot.compareFits| Plot a compareFits Object|
|plot.gls| Plot a gls Object|
|plot.intervals.lmList| Plot lmList Confidence Intervals|
|plot.lmList| Plot an lmList Object|
|plot.lme| Plot an lme or nls object|
|plot.nffGroupedData| Plot an nffGroupedData Object|
|plot.nfnGroupedData| Plot an nfnGroupedData Object|
|plot.nmGroupedData| Plot an nmGroupedData Object|
|plot.ranef.lmList| Plot a ranef.lmList Object|
|plot.ranef.lme| Plot a ranef.lme Object|
|pooledSD| Extract Pooled Standard Deviation|
|predict.gls| Predictions from a gls Object|
|predict.gnls| Predictions from a gnls Object|
|predict.lmList| Predictions from an lmList Object|
|predict.lme| Predictions from an lme Object|
|predict.nlme| Predictions from an nlme Object|
|print.summary.pdMat| Print a summary.pdMat Object|
|print.varFunc| Print a varFunc Object|
|qqnorm.gls| Normal Plot of Residuals from a gls Object|
|qqnorm.lme| Normal Plot of Residuals or Random Effects from an lme Object|
|quinModel| Model function for the Quinidine data|
|random.effects| Extract Random Effects|
|ranef.lmList| Extract lmList Random Effects|
|ranef.lme| Extract lme Random Effects|
|reStruct| Random Effects Structure|
|recalc| Recalculate Condensed Linear Model Object|
|recalc.corStruct| Recalculate for corStruct Object|
|recalc.modelStruct| Recalculate for a modelStruct Object|
|recalc.reStruct| Recalculate for an reStruct Object|
|recalc.varFunc| Recalculate for varFunc Object|
|residuals.gls| Extract gls Residuals|
|residuals.glsStruct| Calculate glsStruct Residuals|
|residuals.gnlsStruct| Calculate gnlsStruct Residuals|
|residuals.lmList| Extract lmList Residuals|
|residuals.lme| Extract lme Residuals|
|residuals.lmeStruct| Calculate lmeStruct Residuals|
|residuals.nlmeStruct| Calculate nlmeStruct Residuals|
|simulate.lme| Simulate results from lme models|
|solve.pdMat| Calculate Inverse of a Positive-Definite Matrix|
|solve.reStruct| Apply Solve to an reStruct Object|
|splitFormula| Split a Formula|
|summary.corStruct| Summarize a corStruct Object|
|summary.gls| Summarize a gls Object|
|summary.lmList| Summarize an lmList Object|
|summary.lme| Summarize an lme Object|
|summary.modelStruct| Summarize a modelStruct Object|
|summary.nlsList| Summarize an nlsList Object|
|summary.pdMat| Summarize a pdMat Object|
|summary.varFunc| Summarize varFunc Object|
|update.modelStruct| Update a modelStruct Object|
|update.varFunc| Update varFunc Object|
|varClasses| Variance Function Classes|
|varComb| Combination of Variance Functions|
|varConstPower| Constant Plus Power Variance Function|
|varExp| Exponential Variance Function|
|varFixed| Fixed Variance Function|
|varFunc| Variance Function Structure|
|varIdent| Constant Variance Function|
|varPower| Power Variance Function|
|varWeights| Extract Variance Function Weights|
|varWeights.glsStruct| Variance Weights for glsStruct Object|
|varWeights.lmeStruct| Variance Weights for lmeStruct Object|
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